what is a variant?
a virus whose genome sequence differs (varies from a reference virus
what is a strain/serotype?
a variant that possess unique and stable phenotypic characteristics; also referred to as a serotype
what is antigenic drift?
selection favors those strains that don't illicit a strong immune response
coupled with antigenic original sin, it means that response can be very different
the accumulation of minor genetic changes
what is antigenic shift?
simultaneous infection of pigs with both human and avian influenza strains leads to a unique new strain of virus
the human population is entirely unprepared
what is gene conversion?
when a trypanosome infects a human, it will replicate before adaptive immunity can fight it. most of the resulting trypanosomes will express the same dominant VSG
chronic cycle of antibody production and antigen clearance leads to immune complex deposition and heavy inflammation
eventually neurological damage results and the individual falls into a coma
malaria uses a similar evasion strategy
what is VSG?
variable surface genome, only one of those variants can be expressed at a time
what is superantigen?
a molecule that, by binding nonspecifically to MHC class II molecules and T cell receptors, stimulates the polyclonal activation of T cells
how does a superantigen work?
usually, they contain binding sites that allow them to cross-link MHC class II (on the APC) as well as the antigen receptor and CD28 (on the CD4+ T cell)
results in non-specific activation of CD4+ T cells and excessive amounts of IL-2, IFNy, and TNFa
primary immunodeficieny
an immunodeficiency resulting from an inherited defect in immune development or function
loosely categorized by effects innate or adaptive responses; grouped by the specific components they affect
all immune components (innate or adaptive, humoral or cell-mediated) can be affected
nature of innate immune defect will determine which pathogens are most problematic
what are the warning signs of primary immunodeficiency?
early detection is key for primary immunodeficiency
recurrent infections are often an indication
can be difficult to detect based on the presence of maternal antibodies
if there is cause for concern the response to vaccines can be monitored
newborn blood samples are screened for TCR excision circles
secondary immunodeficiency
a condition where the immune system becomes compromised due to external factors, such as infections like HIV/AIDS, malnutrition, certain medications like chemotherapy, or chronic illness
what is an opportunistic infection?
an infection that takes place when a pathogen only cause serious illness in individuals with a weakened immune system
what is SCID?
severe combined immunodeficiency
stems from genetic defects leading to a lack of T cells in the periphery
defective differentiation of myeloid and lymphoid lineages from HSCs
defective cytokine signaling in T-cell progenitors
defects in purine metabolism
rearrangement defects caused by RAG1, RAG2, or other proteins involved in gene rearrangement
signaling defects of pre-TCR or TCR
what causes SCID?
reticular dysgenesis
ADA deficiency
impaired RAG1/2
disruption of genes for cytokine signaling
disruption of the genes involved in pre-TCR and pre-TCR signaling
bare-lymphocyte syndrome
no MHC class II molecules
lack of positive T cell selection events
impaired peripheral helper T cell responses
defective MHC class I expression
mutated TAP genes
impaired positive selection of CD8+ T cells
heightened susceptibility to viral infections
hyper IgM syndrome
deficiency in CD40L impairing communications between helper T cells and APCs
impairs interactions between B cells and helper T cells leading to limited production of antibodies to T-dependent Ag
production of Ab to T-independent Ag not affected, leading to high levels of IgM
hyper IgE syndrome
characterized by skin abscesses, recurrent pneumonia, eczema, and high levels of IgE
may be accompanied by facial abnormalities and bone fragility
induced by STAT3 gene mutation
causes dysregulation of TH pathways, particularly TH17
CVID
common variable immunodeficiency disorders
several defects induce this problem
allows recurrent infections due to immunodeficiency
one or more antibody levels are seriously reduced, though B cell numbers are usually normal
X-linked agammaglobulinemia
extremely low levels of IgG, absence of other isotypes, causes recurrent bacterial infections
caused by a defect in Bruton's tyrosine kinase required for BCR signal transduction
B cells are locked in the pro- to pre-B cell stage in the bone marrow
disease managed by antibiotics and passive antibodies
leukocyte adhesion deficiency
caused by an abnormality in the gene for the common B chain of inegrin adhesion molecules
limits leukocyte recruitment to inflamed areas
higher susceptibility to bacterial and fungal infections
severity of defect varies for unknown reasons
chronic granulomatous disease
defect in NADPH oxidative pathway used by phagocytes to generate ROS
results in more bacterial/fungal infections and higher degrees of inflammation responses that produce granulomas
treatment relies on anti-fungal/antibacterial drugs
general complement deficiency
C4 defects: generalized failure to activate complement
alternative pathway failure: failure of entire pathway
often results in greater likelihood of bacterial/fungal infections
IPEX
mutated and inactive FoxP3 gene preventing development and function of T(REG) cells
allows autoreactive T cells that escape the thymus to go unchecked
immune destruction of bowel, pancreas, thyroid, skin can result in death before 2 years of age
APECED
caused by a mutation in the AIRE gene for autoimmmune regulatory activities
allows escape of autoreactive T cells from the thymus, causing organ-specific autoimmunity
replacement therapy
passive Ig injection
production and injection of recombinant protein
gene therapy
replacement of missing or defective gene
bone marrow transplantation
replacement of missing cell type or lineage
what are the causes of secondary immunodeficiency?
acquired hypogammaglobulinemia
agent-induced immunodeficiency
infectious disease
how is HIV spread?
intimate contact with infected body fluids
vaginal/anal intercourse
receipt of infected blood/blood products
passage of HIV from mother to infant
what are the important structural components of HIV?
RNA retro-virus
expresses gp120 and gp41 glycoproteins
preferentially infects CD4+ T cells
binds CD4 and then CXCR4 and/or CCR5
what are the three structural genes of HIV?
gag
pol
env
what are the three phases of HIV infection?
acute phase
asymptomatic phase
AIDS
what are the targets of HAART?
chemokine receptor antagonists
fusion inhibition
RT inhibition
integrase inhibition
protease inhibition
what are some of the challenges to finding an HIV vaccine?
a vaccine is hard to produce
virus mutates rapidly
trials have been ineffective
dangers of testing attenuated vaccines