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Campbell Biology: Chapter 8

front 1

Which term most precisely describes the cellular process of breaking down large molecules into smaller ones?

back 1

Catabolism

front 2

Which metabolic process can occur without a net influx of energy from some other process?

back 2

Cellular Respiration

front 3

Catabolic Pathway

back 3

A metabolic pathway that releases energy by breaking down complex molecules to simpler molecules.

front 4

Catabolism is to anabolism, as ______ is to ______.

A) exergonic; spontaneous

B) exergonic; endergonic

C) free energy, entropy

D) work; energy

E) entropy, enthalpy

back 4

exergonic; endergonic

front 5

Anabolic Pathway

back 5

A metabolic pathway that consumes energy to synthesize a complex molecule from simpler molecules.

front 6

Kinetic Energy

back 6

Energy can be associated with the relative motion of object.

front 7

Thermal Energy

back 7

Kinetic energy associated with the random movement of atoms or molecules.

front 8

Heat

back 8

Thermal energy transferred from one object to another.

front 9

Potential Energy

back 9

Energy that matter possesses because of its location or structure.

front 10

Chemical Energy

back 10

The potential energy available for release in a chemical reaction.

front 11

First Law of Thermodynamics

back 11

Energy can be transferred or transformed but neither can be created or destroyed.

front 12

Second Law of Thermodynamics

back 12

Every Energy transfer or transformation increases the disorder (entropy) of the universe.

front 13

Thermodynamics

back 13

The study of energy transformation that occur in a collection of matter.

front 14

Entropy

back 14

A thermodynamic quantity representing the unavailability of a system's thermal energy for conversion into mechanical work, often interpreted as the degree of disorder or randomness in the system.

front 15

Spontaneous Process

back 15

The time-evolution of a system in which it releases free energy (usually as heat) and moves to a lower, more thermodynamically stable energy state.

front 16

Consume energy to build up polymers from monomers

back 16

Anabolic Pathways

front 17

Living organisms increase in complexity as they grow, resulting in a decrease in the entropy of an organism. How does this relate to the Second Law of Thermodynamics?

back 17

As a consequence, growing organisms cause a greater increase in entropy in their environment than than the decrease in entropy associated with their growth.

front 18

Whenever energy is transformed, there is always an increase in the...

back 18

entropy of the universe

front 19

Second Law of Thermodynamics

back 19

Every chemical reaction must increase the total entropy of the universe

front 20

Type of reaction that would decrease the entropy within a cell

back 20

Anabolic Reaction

front 21

What is an example of potential energy rather than kinetic?

back 21

A molecule of glucose

front 22

Metabolism consists of all the energy transformation reactions in an organism.

back 22

True

front 23

The energy in a molecule* that is available for conversion to some other form. All molecules* have an inherent free energy.

back 23

Free energy

front 24

The difference in free energy between two molecules or “states.”

back 24

Free energy change (DG)

front 25

A+B→C+D

Example: glucose + fructose --> sucrose and H2O.

back 25

Free energy change

front 26

If DG < 0, chemical reaction is

back 26

Exergonic

front 27

If DG > 0, chemical reaction is

back 27

Endergonic

front 28

Requires input of energy. Cannot occur unless energy from some other source is added.

back 28

Endergonic

front 29

Cells carry out endergonic reactions by _______ them to a more strongly exergonic reaction.

back 29

Coupling

front 30

What is the most common exergonic reaction

back 30

ATP hydrolysis

front 31

An exergonic reaction or process is used to drive an endergonic reaction or process.

back 31

Energy coupling

front 32

Typical nucleotide with 3 phosphates attached

back 32

ATP (Adenosine Triphosphate)

front 33

Terminal phosphate is removed, producing ADP and Pi (inorganic phosphate)

back 33

ATP hydrolysis

front 34

  • Overcoming a barrier to start an exergonic reaction
  • Energy must be added to break bonds before others are formed.
  • A common non‐catalytic way to overcome activation energy (EA) is heat

back 34

Activation energy

front 35

  • A substance that accelerates a chemical reaction without being changed by it.
  • Act by lowering the activation energy, so that it is not a barrier under cellular conditions.

back 35

Catalyst

front 36

  • Accelerate the rates of exergonic chemical reactions by lowering the activation energy.
  • Cannot catalyze endergonic reactions

back 36

Ezyme

front 37

How is cellular metabolism regulated?

back 37

Enzymes

front 38

  • All biochemical reactions are exergonic.
  • Most exergonic reactions require catalysis to overcome the activation energy.

back 38

True

front 39

Breakdown of glucose to make ATP

back 39

Catabolic

front 40

Synthesis of macromolecules from smaller subunits.

back 40

Anabolic

front 41

Usually proteins

back 41

Enzymes

front 42

Cavity where chemical reaction takes place

back 42

Active site

front 43

Change in protein folding tightens fit around substrate after binding

back 43

Induced fit

front 44

  1. substrate(s) bind in active site
  2. enzyme undergoes slight change in 3D structure (induced fit)
  3. chemical reaction takes place
  4. product(s) released

back 44

Steps in catalysis

front 45

Enzymes lower the activation energy by:

back 45

  • acting as a template to bring reactive groups into proximity
  • straining bonds & stabilizing transition state
  • providing microenvironment to chemical reaction
  • participating directly in chemical reaction

front 46

Cofactor

back 46

Non‐protein molecule required for catalysis

front 47

Coenzyme

back 47

Organic molecule that acts as cofactor (subset of “cofactor”)

front 48

Competitive inhibition

back 48

A molecule that is similar in shape to the substrate binds to and blocks the active site.

front 49

Noncompetitive regulation

back 49

Molecule binds to a site other than the active site and inhibits or promotes catalysis

front 50

Allosteric site

back 50

Site to which regulator binds. Not the active site.

front 51

Binding of a molecule...

back 51

induces a change in conformation. Change in conformation changes shape of active site.

front 52

Conformations

back 52

Proteins exist in 2 or more alternative, slightly different 3D shapes

front 53

Can activate (upper) or be inhibitory (lower).

back 53

Allosteric regulation

front 54

Cooperativity

back 54

Occurs in enzymes w/ more than one subunit. Binding of one substrate molecule increases the stability of the active conformation.

front 55

Feedback inhibition

back 55

A “downstream” product inhibits an earlier step in a biochemical pathway.

front 56

Phosphorylated Intermediate

back 56

The recipient molecule with the phosphate group covalently bonded to it

front 57

Substrate

back 57

The reactant an enzyme acts on

front 58

The enzyme binds to its substrate (or substrates, when there are two or more reactants), forming a(n)

back 58

Enzyme-substrate complex

front 59

As the substrate enters the active site...

back 59

The enzyme changes shape slightly due to interactions between the substrate's chemical groups and the chemical groups on the side chains of the amino acids hat form the active site.

front 60

Noncompetitive inhibitors

back 60

Do not directly compete with the substrate to bind to the enzyme at the active site.

front 61

In cells, what is usually the immediate source of energy for an endergonic reaction?

back 61

ATP

front 62

What is the fate of the phosphate group that is removed when ATP is converted to ADP?

back 62

It is acquired by a reactant in an endergonic reaction.

front 63

In this reaction _____.

back 63

the products have less potential energy than the reactants

front 64

How does an enzyme increase the rate of the chemical reaction it catalyzes?

back 64

An enzyme reduces the free energy of activation (EA) of the reaction it catalyzes.

front 65

Sucrose is a disaccharide, composed of the monosaccharides glucose and fructose. The hydrolysis of sucrose by the enzyme sucrase results in

back 65

breaking the bond between glucose and fructose and forming new bonds from the atoms of water.

front 66

Zinc, an essential trace element for most organisms, is present in the active site of the enzyme carboxypeptidase. The zinc most likely functions as a(n)

back 66

cofactor necessary for enzyme activity.

front 67

What best describes this reaction?

back 67

The amount of free energy released as a result of the catalyzed reaction is indicated by "d."

front 68

A series of enzymes catalyze the reaction X→Y→Z→A. Product A binds to the enzyme that converts X to Y at a position remote from its active site. This binding decreases the activity of the enzyme.

Substance A functions as a(n)...

back 68

Allosteric inhibitor

front 69

Some of the drugs used to treat HIV patients are competitive inhibitors of the HIV reverse transcriptase enzyme. Unfortunately, the high mutation rate of HIV means that the virus rapidly acquires mutations with amino acid changes that make them resistant to these competitive inhibitors. Where in the reverse transcriptase enzyme would such amino acid changes most likely occur in drug-resistant viruses?

back 69

In or near the active site