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45 notecards = 12 pages (4 cards per page)

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Lab 7

front 1

What are restriction enzymes and where do they come from?

back 1

They are enzymes used for cutting out specific sections of DNA

They evolved in bacteria as defense mechanisms against viruses.

front 2

Why can’t you use water as a buffer for electrophoresis?

back 2

Buffer solutions contain salts, which help conduct electricity.

front 3

What are the 3 things electrophoresis separates molecules based on?

back 3

Mass

Shape

Charge

front 4

What is CRISPR-Cas9 and how is it used in genetics?

back 4

CRISPR-Cas9 is a method of editing DNA by “programming” enzymes to find a particular DNA sequence in a host cell and cut it out.

It can be used in gene therapy or food and livestock modification.

front 5

What is a restriction site?

back 5

A restriction site is a section on a DNA strand that enzymes bind to.

front 6

What charge is DNA and how do you know?

back 6

Negative

The phosphate groups make them negative.

front 7

What is a DNA ladder and why is it used?

back 7

A DNA ladder is a set of DNA fragments that’s as a comparison between altered and unaltered DNA.

DNA ladders identify weight, size, and stability of DNA fragments

front 8

What are 2 reasons why we add loading dye to a DNA sample?

back 8

Makes the sample visible

The dye contains glycerin which adds density to the sample, allowing it to move quickly.

front 9

What is lambda and why significance does it have to biology?

back 9

Lambda is a virus. Its DNA is used as a standard for comparison in molecular biology to stabilize DNA fragments.

front 10

What is a plasmid? What are the shapes?

back 10

Circular DNA found in bacteria.

front 11

What did NEBcutter allow you to do this lab activity?

back 11

NEBcutter allowed you to determine which enzyme would be best for cutting a particular section of DNA

front 12

Who was the scientist that developed DNA fingerprinting and what in what year?

back 12

Dr. Allen Jefferys

1986

front 13

Who was the actual rapist and murder in Narborough, England?

back 13

Collin Pitchfork

front 14

Who was falsely accused of raping and killing the two women in the foot path murders?

back 14

Richard Buckland

front 15

Who wrote a book over the foot path murders?

back 15

Joseph Wambaugh

front 16

Who were the two victims in the footpath murders?

back 16

Lynda Mann & Dawn Ashworth

front 17

When placing DNA in an electrophoresis chamber, which side (anode or cathode) should the wells be placed near?

back 17

Cathode, the negative end, because DNA is negative and will travel to the anode, positive.

front 18

Which laboratory tool would allow you to do a paternity test?

back 18

Electrophoresis

front 19

What gel is used to separate DNA or RNA molecules?

back 19

Agarose

front 20

A virus that infects and replicates inside bacteria.

back 20

Bacteriophage

front 21

DNA molecules that are linked together like chains after replication.

back 21

Catenates

front 22

The transfer of DNA between two bacterial cells through direct contact.

back 22

Conjugation

front 23

Describes circular DNA that has a single-strand break (one side cut).

back 23

Nicked

front 24

A small, circular piece of DNA found in bacteria that can replicate independently

back 24

Plasmid

front 25

A tube-like structure that connects bacterial cells during conjugation to transfer DNA.

back 25

Sex Pilus

front 26

DNA that is tightly twisted, making it compact.

back 26

Supercoiled

front 27

A gel-like substance used to separate DNA fragments by size.

back 27

Agarose

front 28

The positive end of an electrical field where negatively charged DNA moves toward.

back 28

Anode

front 29

Visible lines showing DNA fragments of different sizes after electrophoresis.

back 29

Bands (on a gel)

front 30

The negative end of an electrical field; DNA starts near this end because it’s negatively charged.

back 30

Cathode

front 31

A tool used to create wells in the gel for loading DNA samples.

back 31

Comb

front 32

A pattern of DNA bands unique to each person, used for identification.

back 32

DNA Fingerprint

front 33

A mixture of DNA fragments of known sizes used as a reference in a gel.

back 33

DNA Ladder

front 34

A liquid solution that carries electric current through the gel.

back 34

Electrophoresis Buffer

front 35

The use of scientific methods to solve crimes or identify individuals.

back 35

Forensics

front 36

A type of bacteriophage often used as a source of DNA in lab experiments.

back 36

Lambda

front 37

The separate columns in the gel where each DNA sample is loaded.

back 37

Lanes (on a gel)

front 38

A colored solution added to DNA samples to help see and track them during electrophoresis.

back 38

Loading/Tracking Dye

front 39

Small holes in the gel where DNA samples are placed before running the gel.

back 39

Wells (in a gel)

front 40

The matching units of DNA: A–T and G–C.

back 40

Base Pairs

front 41

DNA ends that are cut straight across, with no overhangs.

back 41

Blunt Ends

front 42

A gene-editing tool that can precisely cut and modify DNA sequences.

back 42

CRISPR-Cas9

front 43

An enzyme that cuts DNA at specific sequences.

back 43

Endonuclease (Restriction Enzyme)

front 44

The exact DNA sequence where a restriction enzyme cuts.

back 44

Restriction Site

front 45

DNA ends that have short single-stranded overhangs after being cut by enzymes, allowing them to join easily with matching ends.

back 45

Sticky Ends